PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc05g051420.1.1
Common NameLOC104647583
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ZF-HD
Protein Properties Length: 168aa    MW: 19300.4 Da    PI: 10.3555
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc05g051420.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer83.91.9e-26351559
         ZF-HD_dimer  5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59
                        +YkeClkNhAa +GghavDGCgEfmps       + +kCa C+CHRnFHR+++++
  Solyc05g051420.1.1  3 KYKECLKNHAAGIGGHAVDGCGEFMPS------GDIFKCAVCNCHRNFHRKDTVH 51
                        8*************************9......3569**************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257742.0E-15249IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.4E-24348IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.3E-23349IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152322.551448IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.9E-1599163IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.3E-26102164IPR009057Homeodomain-like
TIGRFAMsTIGR015654.1E-23102158IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MSKYKECLKN HAAGIGGHAV DGCGEFMPSG DIFKCAVCNC HRNFHRKDTV HHHHPCGYFP  60
HIMPRRRSLV LPSTSRGGGF REDQELLEMC NPNKNIIGTL LKKRFRTKFS QEHKDKMLRL  120
AEKLGWKLQR HDEGVVQQLC NEIGIKRHVF KVWLHNNKHT LGKKTNP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-211031601875ZF-HD homeobox family protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU4073189e-10S.lycopersicum DNA sequence from clone SL_MboI-118B3 on chromosome 4, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010321484.11e-123PREDICTED: zinc-finger homeodomain protein 1-like
SwissprotQ6YXH51e-55ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBLK4C1H31e-123K4C1H3_SOLLC; Uncharacterized protein
STRINGSolyc05g051420.1.11e-122(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51824128
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02540.13e-55homeobox protein 21
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]